Regulation of mature mRNA levels by RNA processing efficiency

Research datakeyboard_double_arrow_right Dataset 13 May 2023 English Publisher:ZenodoFunded by:WT | Beyond the pol II CTD: th..., WT | The point of no return: a...

Authors: Henfrey, Callum; Murphy, Shona; Tellier, Michael;

doi: 10.5281/zenodo.7929892 , 10.5281/zenodo.7933151 , 10.5281/zenodo.7929893

Regulation of mature mRNA levels by RNA processing efficiency

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Abstract

Data from the research paper "Regulation of mature mRNA levels by RNA processing efficiency" by Henfrey, C., Murphy, S., and Tellier, M.: -Highest expressed transcript annotation for protein-coding genes, gencode v38. -15 txt (BED) files for chromatin vs nucleoplasm enrichment gene sets: HeLa full gene sets, canonical protein only sets, chromatin RNA seq subsamples, mNET seq subsamples, Raji gene sets. -Proteomics data table -mRNA half-life table -Splicing efficiency for POINT-seq, ChrRNA-seq, NucRNA-seq table -Ser2-P mNET-seq readthrough index data table -Splicing efficiency for siLuc/siEX3 table (ChrRNA-seq, NucRNA-seq) -RMATs output tables for alternative splicing results (siEX3 vs siLuc) -Tables for TSS:TES quantifications (mNET-seq(CTD) vs log2FoldChange, chr/nuc/mnet siEX3 vs siLuc)

Funding: Wellcome Trust Investigator Awards [WT106134AIA and WT210641/Z/18/Z to S.M.]. Funding for open access charge: Wellcome Trust

Related Organizations

University of Oxford
United Kingdom
University of Leicester
United Kingdom

Keywords

mNET-seq, POINT-seq, RNA Processing, lncRNA, Pol II CTD, RNA-seq, Transcription, Chromatin Retention, RNA Exosome

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