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microbiome/miaSim: v3.15-alpha

Authors: YagmurSimsekk; Lahti, Leo; Gao, Yu; Garza, Daniel; Nitesh Turaga; Borman, Tuomas; Jwokaty; +2 Authors

microbiome/miaSim: v3.15-alpha

Abstract

What's Changed simulateGLV by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/1 Vignettes by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/2 SOI simulation files by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/6 HubbellSE is ready to be merged by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/7 tests by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/14 Authors by @antagomir in https://github.com/microbiome/miaSim/pull/19 Updates with BiocCheck::BiocCheckGitClone() fail by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/20 Basic changes by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/22 Stochastic logistic simulation function by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/23 Utils by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/26 Devel by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/27 matrix to assay by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/32 vignette update by @antagomir in https://github.com/microbiome/miaSim/pull/31 Switch to TreeSE support by @antagomir in https://github.com/microbiome/miaSim/pull/35 fixed README by @antagomir in https://github.com/microbiome/miaSim/pull/37 Maintainer should be listed first by @antagomir in https://github.com/microbiome/miaSim/pull/38 ok by @antagomir in https://github.com/microbiome/miaSim/pull/39 website fix by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/42 test automated builds by @antagomir in https://github.com/microbiome/miaSim/pull/43 build actions by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/44 Update functions docs and tests by @gaoyu19920914 in https://github.com/microbiome/miaSim/pull/34 testing website by @antagomir in https://github.com/microbiome/miaSim/pull/47 Test by @antagomir in https://github.com/microbiome/miaSim/pull/48 fix GHA by @antagomir in https://github.com/microbiome/miaSim/pull/49 Test by @antagomir in https://github.com/microbiome/miaSim/pull/50 Test by @antagomir in https://github.com/microbiome/miaSim/pull/51 maintainer email changed by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/53 Output by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/59 add logo by @TuomasBorman in https://github.com/microbiome/miaSim/pull/55 miaSimShiny link added by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/57 Added back estimateAFromSimulations and generateSimulations by @antagomir in https://github.com/microbiome/miaSim/pull/63 Vignette & tests by @antagomir in https://github.com/microbiome/miaSim/pull/65 Vignette fix by @antagomir in https://github.com/microbiome/miaSim/pull/68 Assay name by @antagomir in https://github.com/microbiome/miaSim/pull/69 examples moved to vignette by @YagmurSimsekk in https://github.com/microbiome/miaSim/pull/66 Fix typos in method functions and packages vignette by @Daenarys8 in https://github.com/microbiome/miaSim/pull/70 parallel computation in caseStudy2 by @gaoyu19920914 in https://github.com/microbiome/miaSim/pull/71 Case2 by @antagomir in https://github.com/microbiome/miaSim/pull/72 New Contributors @YagmurSimsekk made their first contribution in https://github.com/microbiome/miaSim/pull/1 @antagomir made their first contribution in https://github.com/microbiome/miaSim/pull/19 @gaoyu19920914 made their first contribution in https://github.com/microbiome/miaSim/pull/34 @TuomasBorman made their first contribution in https://github.com/microbiome/miaSim/pull/55 @Daenarys8 made their first contribution in https://github.com/microbiome/miaSim/pull/70 Full Changelog: https://github.com/microbiome/miaSim/commits/MEE_manuscript

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