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Dataset . 2023
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Supplementary data for "WebQUAST: online evaluation of genome assemblies"

Research datakeyboard_double_arrow_right Dataset 24 Apr 2023Publisher:Zenodo
Authors: Mikheenko, Alla; Saveliev, Vladislav; Hirsch, Pascal; Gurevich, Alexey;

doi: 10.5281/zenodo.7863703 , 10.5281/zenodo.7860618 , 10.5281/zenodo.7860617

Supplementary data for "WebQUAST: online evaluation of genome assemblies"

Abstract

Supplementary data for A. Mikheenko, V. Saveliev, P. Hirsch, A. Gurevich. WebQUAST: online evaluation of genome assemblies. Reference genomes of two Escherichia coli K-12 substrains (MG1655 and W3110) and genome annotation of MG1655. De novo assemblies of the Escherichia coli K-12 MG1655 short-read Illumina dataset (ERR008613) with ABySS, MEGAHIT, SPAdes, and Velvet. WebQUAST reports in three evaluation modes: * Use Case 1: reference-free evaluation (sample_data_no_ref) * Use Case 2: reference-based evaluation (sample_data_true_ref) * Use Case 3: evaluation based on a close reference (sample_data_close_ref) The snapshot (commit 2bd5060) of the QUAST command-line version used by WebQUAST for generating the reports.

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Keywords

genome assembly, QUAST, genome assembly evaluation

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
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