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Flex-sweep is a convolutional neural network (CNN) -based method of detecting selective sweeps. It is available at https://github.com/lauterbur/Flex-sweep, but is best run via a singularity container. This obviates the sometimes-tedious requirements of installing dependencies, except for the application to interface with the container itself, in this case singularity. The singularity container to run Flex-sweep is provided here. In addition, pre-trained models are provided for some common use-cases. The CNN training process can be time consuming, so these models make using Flex-sweep faster if they are appropriate for the data set to be classified.
selective sweep, positive selection, convolutional neural network, population genetics, bioinformatics, singularity
selective sweep, positive selection, convolutional neural network, population genetics, bioinformatics, singularity
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