Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
versions View all 2 versions
addClaim

Ab initio multiple spawning simulations for "Rehybridization dynamics into the pericyclic minimum of an electrocyclic reaction imaged in real-time"

Authors: Liu, Yusong; Sanchez, David M.; Ware, Matthew R.; Champenois, Elio G.; Yang, Jie; Nunes, J. Pedro. F.; Attar, Andrew; +13 Authors

Ab initio multiple spawning simulations for "Rehybridization dynamics into the pericyclic minimum of an electrocyclic reaction imaged in real-time"

Abstract

60 ICs a(0.82)-2SA-cas(6,4)-SCF/6-31G* using AIMS/uPBE0-D3 for 1st ps of alpha-terpinene photochemistry. 20 for each conformer upon rotation around the isopropyl group. Each initial condition (IC) is saved in a separate folder labeled after conformers m, p, t, and with the index number of the initial condition. The folder contains the positions and amplitudes of all trajectory basis functions (TBF) arising from the initial condition as well as information about their coupling. The TBF index 1 always refers to the TBF launched in the Franck-Condon region of the excited state based on an initial condition sampled from a ground state Wigner distribution. Description of the folders and subsequent files in each IC folder: Simulation_data X-YYYY : X is the isomer and YYYY is the initial condition number "Positions.x.xyz" : Files containing the geometries of each TBF in cartesian coordinates in Angstroms at each time step. The "x" in the filename corresponds to the index of the TBF. "Amp.x" : Files containing the TBF amplitudes for each timestep. "Spawn.log" : File containing timing information about the spawning events. "S.dat" : File containing coupling matrices between the TBFs for every time step. "ext_x" : Folders containing extensions of TBFs on DFT level. Each folder contains a file "coors.xyz" with cartesian coordinates in Angstroms at each time step. The timestep size of the DFT trajectories is uniformly 0.5 femtoseconds. Only TBFs in the groundstate are extended on DFT level. Therefore, there is no folder "ext_1". Simulation_Parameters : Parameters for FMS and TeraChem nonadiabatic dynamics X-rotamer : x is isomer containing parameter files for all X rotamers "c0.casscf" : Binary file with the alpha(0.82)-SA2-CAS(6,4)-SCF/6-31G* orbitals "Geometry.dat" : Initial condition (position and momentum) to start the FMS/TeraChem nonadiabatic dynamics "Control.dat" : Parameter file for running FMS "misc_options" : Parameter file for running TeraChem "DFT-tc.in" : TeraChem adiabatic dynamics on ground electronic state (ext_x)

Related Organizations
  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    1
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 21
  • 21
    views
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
1
Average
Average
Average
21