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ZENODO
Software . 2023
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2023
License: CC BY
Data sources: Datacite
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Genomic inference of a severe human bottleneck during the Early to Middle Pleistocene transition

Authors: Hu, Wangjie; Hao, Ziqian; Du, Pengyuan; Di Vincenzo, Fabio; Manzi, Giorgio; Cui, Jialong; Fu, Yun-Xin; +2 Authors

Genomic inference of a severe human bottleneck during the Early to Middle Pleistocene transition

Abstract

The demographic history has been a foundation of human evolutionary studies for more than a century. We developed a novel method referred to as the fast infinitesimal time coalescent (FitCoal) process. This method allows the accurate calculation of the composite likelihood of a site frequency spectrum and provides the precise inference of recent and ancient demographic history. FitCoal has been developed as a free plug-in of eGPS software while FitCoal can also be download and run as an independent Java package. If you are familiar with DOS/Linux or need batch processing, you can run FitCoal on command lines. You need to install Java environment first. The recommended JAVA version is 1.8 or the latest. Users can visit https://www.java.com/ to download the JAVA for free. Please note that the openJDK is not supported. If you need Graphical User Interface (GUI), please download and install the eGPS software. Then copy the FitCoal to the eGPS plug-in directory (…/egps/config/plugin) and restart eGPS. You can find FitCoal under the plug-in menu.

Keywords

demographic history inference, population genetics

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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