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ZENODO
Software . 2023
License: http://opensource.org/licenses/MIT
Data sources: ZENODO
ZENODO
Software . 2023
License: https://opensource.org/licenses/MIT
Data sources: Datacite
ZENODO
Software . 2023
License: https://opensource.org/licenses/MIT
Data sources: Datacite
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Oligo Designer Toolsuite

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 12 Apr 2023Publisher:Zenodo
Authors: Isra Mekki; Francesco Campi; Louis Kümmerle; Bright, Chelsea; Lücken, Malte; Fabian Theis; Marie Piraud; +1 Authors
Code repository: https://github.com/HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite/tree/v0.1.3

doi: 10.5281/zenodo.7823048 , 10.5281/zenodo.7823047

Oligo Designer Toolsuite

Abstract

The Oligo Designer Toolsuite is a collection of modules that provide all basic functionalities for custom oligo design pipelines within a flexible Python framework. Furthermore, we introduce a common underlying data structure, which allows the user to easily combine different modules, depending on the required processing steps. We also provide ready-to-use oligo design pipelines for specific experimental setups, e.g. Padlock Probes for Spatial Transcriptomics.

"If you use this software, please cite it as below."

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Keywords

SeqFISH+ probes, oligonucleotide design, MERFISH probes, bioinformatics, Padlock probes

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
1
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15