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ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
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MS and NMR data of in situ Captured Marine Exometabolites

Authors: Morgane Mauduit; Marie Derrien; Marie Grenier; Stéphane Greff; Sacha Molinari; Pierre Chevaldonné; Thierry Pérez; +1 Authors

MS and NMR data of in situ Captured Marine Exometabolites

Abstract

This folder contains the raw data pertaining to the article In Situ Capture and Real Time Enrichment of Marine Chemical Diversity https://doi.org/10.1021/acscentsci.3c00661 Data are organized in folders corresponding to each figure. Briefly, this folder contains the raw mass spectrometry (MS) data, the cytoscape files of the full molecular network (Fig3), the xcel spreadsheets of annotated MS spectra related to each investigated specialized exometabolites from the Mediterranean sponges Aplysina cavernicola (AC, Fig4), Spongia officinalis (SO, Fig5), and Agelas oroides (AO, Fig6), the raw 1H NMR data from each sponge exometabolite (EM) extract with their corresponding crude extract (CR). All MS2 data were acquired on a Bruker Impact II qTOF (ESI positive, collision energy 20-40eV) also deposited here : MSV000091465 SIRIUS software and CANOPUS were used to further annotate the chemodiversity of captured marine EMs All NMR data were acquired on a BRUKER avance II+ instrument (600 MHz, cryoprobe) in CD3OD ------------------------- References related to in silico MS annotation tools: Kai Dührkop, Louis-Félix Nothias, Markus Fleischauer, Raphael Reher, Marcus Ludwig, Martin A. Hoffmann, Daniel Petras, William H. Gerwick, Juho Rousu, Pieter C. Dorrestein and Sebastian Böcker Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra. Nature Biotechnology, 2020. https://doi.org/10.1038/s41587-020-0740-8 Yannick Djoumbou Feunang, Roman Eisner, Craig Knox, Leonid Chepelev, Janna Hastings, Gareth Owen, Eoin Fahy, Christoph Steinbeck, Shankar Subramanian, Evan Bolton, Russell Greiner, David S. Wishart ClassyFire: automated chemical classification with a comprehensive, computable taxonomy J Cheminf, 8, 2016. https://doi.org/10.1186/s13321-016-0174-y Kim, Hyun Woo and Wang, Mingxun and Leber, Christopher A. and Nothias, Louis-Félix and Reher, Raphael and Kang, Kyo Bin and van der Hooft, Justin J. J. and Dorrestein, Pieter C. and Gerwick, William H. and Cottrell, Garrison W. NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products. Journal of Natural Products, 84, 2021. https://doi.org/10.1021/acs.jnatprod.1c00399

Keywords

Agelas oroides, Spongia officinalis, Nuclear Magnetic Resonance (NMR), Mass Spectrometry (MS), Aplysina cavernicola, Marine exometabolites, Mediterranean Sponges, Solide Phase Extraction (SPE), In situ

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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Average
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