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FreeSurfer Processing & Editing Overview

descriptionPublicationkeyboard_double_arrow_right Other literature type 03 Mar 2023 English Publisher:Zenodo
Authors: Savalia, Neil; Agres, Phillip; Chan, Micaela; Carreno, Claudia; Nguyen, Linh; Wig, Gagan;

doi: 10.5281/zenodo.7601178 , 10.5281/zenodo.7601179 , 10.5281/zenodo.7800191

FreeSurfer Processing & Editing Overview

Abstract

FreeSurfer processing and editing overview. Description of basic processing, command line operation, and step-by-step guide to manual edits (control points, white-matter edits, pial edits). This was initially made for as a training tool regarding FreeSurfer workflow at the Wig Neuroimaging Laboratory, but examples of artifacts/errors and how to fix them using manual edits should be applicable to any FreeSurfer data. The current version of the manual (v2.1) is an update to the original manual that was referenced in Savalia et al. (2017) Human Brain Mapping (FREESURFER Processing & editing overview – prepared by the Cognitive Neuroimaging Laboratory; October 2015). The updates include reducing lab-specific settings, additional details regarding cerebellum edits, and some updates based on newer versions of FreeSurfer/FreeView.

Keywords

brain, FreeSurfer, MRI

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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