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Software . 2023
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jina-leemon/core-genome-proj: v1.0.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 31 Mar 2023Publisher:Zenodo
Authors: jina-leemon;
Code repository: https://github.com/jina-leemon/core-genome-proj/tree/PoglianoLab

doi: 10.5281/zenodo.7787481 , 10.5281/zenodo.7787482

jina-leemon/core-genome-proj: v1.0.0

Abstract

Release v1.0.0 Overview This is the first release of the text-mining and analysis code used for the Prichard et al., (2023) paper. The code extracts homologs from a list of organisms and analyzes how conserved each protein is across the list. Changelog Full Changelog: https://github.com/jina-leemon/core-genome-proj/commits/PoglianoLab Installation and Usage Make a clone of the repository or directly download the script(s). recommend Conda for PsiBlast installation (not necessary for the code but to get PsiBlast results argparse, re, pandas, and numpy packages needed Contributors Jina Lee with thanks to Amy Prichard and Joseph Pogliano Feedback and Support Please contact me with any issues or questions about this code. You can either open an issue on GitHub or contact me at jil143@ucsd.edu License MIT license

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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