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End-to-end AI framework for interpretable prediction of molecular and crystal properties

Authors: Hyun Park; Ruijie Zhu; E A Huerta; Santanu Chaudhuri; Emad Tajkhorshid; Donny Cooper;

End-to-end AI framework for interpretable prediction of molecular and crystal properties

Abstract

Abstract We introduce an end-to-end computational framework that allows for hyperparameter optimization using the DeepHyper library, accelerated model training, and interpretable AI inference. The framework is based on state-of-the-art AI models including CGCNN, PhysNet, SchNet, MPNN, MPNN-transformer, and TorchMD-NET. We employ these AI models along with the benchmark QM9, hMOF, and MD17 datasets to showcase how the models can predict user-specified material properties within modern computing environments. We demonstrate transferable applications in the modeling of small molecules, inorganic crystals and nanoporous metal organic frameworks with a unified, standalone framework. We have deployed and tested this framework in the ThetaGPU supercomputer at the Argonne Leadership Computing Facility, and in the Delta supercomputer at the National Center for Supercomputing Applications to provide researchers with modern tools to conduct accelerated AI-driven discovery in leadership-class computing environments. We release these digital assets as open source scientific software in GitLab, and ready-to-use Jupyter notebooks in Google Colab.

Keywords

FOS: Computer and information sciences, I.2, Computer engineering. Computer hardware, Computer Science - Machine Learning, Computer Science - Artificial Intelligence, small molecule, FOS: Physical sciences, explainable ai, Machine Learning (cs.LG), TK7885-7895, inorganic crystals, metal-organic frameworks, Condensed Matter - Materials Science, hyperparameter tuning, deep learning, Materials Science (cond-mat.mtrl-sci), FAIR (findable, accessible, interoperable and reusable), interpretable AI, QA75.5-76.95, small molecules, machine learning, Artificial Intelligence (cs.AI), AI, Electronic computers. Computer science, deephyper, mof

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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