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nf-core/nanoseq: nf-core/nanoseq v3.1.0 - NObelium Guppy

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 10 Mar 2023Publisher:Zenodo
Authors: Harshil Patel; Yuk Kei Wan; Wratten, Laura; Sawyer, Chelsea; Ying, Chen; Hakkaart, Christopher; Nf-Core Bot; +7 Authors
Code repository: https://github.com/nf-core/nanoseq/tree/3.1.0

doi: 10.5281/zenodo.7716033 , 10.5281/zenodo.3697959

nf-core/nanoseq: nf-core/nanoseq v3.1.0 - NObelium Guppy

Abstract

Major enhancements Removed the guppy basecaller as distributing it via a docker image is a breach to EULA Bump minimum Nextflow version from 21.10.3 -> 21.10.3 Update pipeline template to nf-core/tools 2.7.2 Update bambu version from 1.0.2 to 2.0.0 Parameters Removed --flowcell as nanoseq no longer supports basecalling Removed --kit as nanoseq no longer supports basecalling Removed --guppy_config as nanoseq no longer supports basecalling Removed --guppy_model as nanoseq no longer supports basecalling Removed --guppy_gpu as nanoseq no longer supports basecalling Removed --guppy_gpu_runners as nanoseq no longer supports basecalling Removed --guppy_cpu_threads as nanoseq no longer supports basecalling Removed --output_demultiplex_fast5 as nanoseq no longer supports basecalling Removed --skip_basecalling as nanoseq no longer supports basecalling Removed --skip_pycoqc as nanoseq no longer supports basecalling Software dependencies Dependency Old version New version bioconductor-bambu 2.0.0 3.0.8

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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