Some output files associated with the analyses in an article (currently) entitled "Parameter estimation and species tree rooting using ALE and GeneRax" The outputs were obtained by running ALEml_undated either with default (maximum likelihood) estimation of the delta, tau, and lambda parameters, or with delta:tau fixed to a pre-defined ratio. The option to fix delta:tau (or other parameter combinations) was recently added to ALE (https://github.com/ssolo/ALE). The .ale files used as input for these analyses (for the bacterial dataset) are available from the data repository for the original 2021 paper here: https://doi.org/10.6084/m9.figshare.12651074.v12