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This data repository contains the mandatory DB for Bakta (db.tar.gz). Bakta is a tool for the rapid & standardized local annotation of bacterial genomes & plasmids. It provides dbxref-rich and sORF-including annotations in machine-readble JSON & bioinformatics standard file formats for automatic downstream analysis: https://github.com/oschwengers/bakta This db provides protein sequence hash digests and lengths of UniProt's UniRef100 clusters, UniParc and NCBI RefSeq sequences for ultra-fast identification & lookups. It has been pre-annotated with several specialized db and enriched with Dbxrefs. Furthermore, seed sequences of UniProt's UniRef90 clusters are stored for fallback homology searches via Diamond sequence alignments. All conducted pre-annotations are logged and provided in the db.log.gz file. External DB versions: NCBI AMRFinderPlus: 2021-08-05 COG: 2020 DoriC: 10 ISFinder: 2019-09-25 Mob-suite: 2.0 Pfam: 34 RefSeq: r207 Rfam: 14.6 UniProtKB/Swiss-Prot: 2021_03 VFDB: 2021-08-05
plasmids, annotation, bioinformatics, bacteria, mag
plasmids, annotation, bioinformatics, bacteria, mag
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