Single-cell information extracted from IMC example data

This repository contains additional information related to IMC example data available at zenodo.org/record/5949116. The following files are available and are part of the IMC Data Analysis workflow gated_cells.zip: contains SpatialExperiment objects storing cells that were manually gated based on their expression values to derive ground truth cell phenotype labels. spe.rds: SpatialExperiment object containing the single-cell information (mean intensity per cell and per channel; cellular metadata; channel metadata) of the processed data. images.rds: CytoImageList object containing the spillover-corrected images. masks.rds: CytoImageList object containing the segmentation masks.

Related Organizations

University of Zurich
Switzerland

Keywords

Imaging mass cytometry, Single-cell

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