Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
versions View all 2 versions
addClaim

CARTK models

Authors: Philippe Youkharibache; Raul Cachau; Balagopalan, Lakshmi;
Abstract

This dataset contains two iCn3D PNG IMAGE files related to the paper: "Generation of anti-tumor chimeric antigen receptors incorporating T cell signaling motifs" - Science Signaling, 2024. (preprint: https://www.biorxiv.org/content/10.1101/2022.12.25.521452v1 ) Files contain Models of CARTKs that can be visualized and analyzed using iCn3D as follows: 1. Download files, then read each file individually in iCn3D: using the link https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html 2. To load a file, use File Menu / Open File command and select the iCn3D PNG image format. - The file CARTK1in_CARTK2in_CARTK3in_CARTK4in_colored-secondary-structure.png contains 4 dimeric structural models of CARTKs: CARTK1, CARTK2, CARTK3, and CARTK4 transmembrane and intracellular regions. one can browse through individual CARTKs using the “a” key on the keyboard (or Alternate command in menu). - The file CARTK3in_icn3d_loadable-highlight-Tyrosines.png contains the CARTK3 dimeric model, with Tyrosines 669, 673, and 846 highlighted. Structures can be manipulated / analyzed / colored using iCn3D commands See Help for details or https://github.com/ncbi/icn3d . Reference: Wang, Jiyao, Philippe Youkharibache, Dachuan Zhang, Christopher J. Lanczycki, Renata C. Geer, Thomas Madej, Lon Phan, et al. 2020. “iCn3D, a Web-Based 3D Viewer for Sharing 1D/2D/3D Representations of Biomolecular Structures.” Bioinformatics 36 (1): 131–35. https://doi.org/10.1093/bioinformatics/btz502

Keywords

CAR-Ts, 3D protein structure models, T cell signaling motifs, anti-tumor chimeric antigen receptors, iCn3D PNG file

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average