Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets

Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets. The same data as in https://zenodo.org/record/5090425, but for Python port for Symphony. The Symphony algorithm is used to perform reference mapping to these atlases. Paper: https://www.nature.com/articles/s41467-021-25957-x Usage: https://github.com/potulabe/symphonypy References available for download: 10x PBMCs Atlas (pbmcs_10x_reference.h5ad) Pancreatic Islet Cells Atlas (pancreas_plate-based_reference.h5ad) Fetal Liver Hematopoiesis Atlas (fetal_liver_reference_3p.h5ad) Healthy Fetal Kidney Atlas (kidney_healthy_fetal_reference.h5ad) T cell CITE-seq atlas (tbru_ref.h5ad) Cross-tissue Inflammatory Immune Atlas (zhang_reference.h5ad) Tabula Muris Senis (FACS) Atlas (TMS_facs_reference.h5ad)

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Medical University of Vienna
Austria

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