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ZENODO
Software . 2013
License: https://www.gnu.org/licenses/gpl-3.0-standalone.html
Data sources: Datacite
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ZENODO
Software . 2013
License: http://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html
Data sources: ZENODO
Claim

PanFunPro

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 27 Nov 2013Publisher:Zenodo
Authors: Lukjancenko, Oksana; Thomsen, Martin Christen; Voldby Larsen, Mette ; Ussery, David Wayne;

doi: 10.5281/zenodo.7583

Abstract

PanFunPro stands for PAN-genome analysis based on FUNctional PROfiles. PanFunPro is a tool for pan-genome analysis. It has several following functionalities – (1) homology detection and genome functional characterization by three HMM-collections, (2) pan-/core genome calculation within the set of proteomes, (3) pairwise pan-/core-genome analysis, (4) specific genome calculation for different subsets of genomes as well as pairwise analysis of specific proteomes, (5) basic statistics for the output genes from the pan-/core-/specific-genome calculation, (6) analysis of available GO information for the output genes from the pan-/core-/specific-genome calculation. PanFunPro is provided in two parts: PanFunPro2profiles.pl and PanFunPro2apply.pl

Please be aware that this code is not being actively developed, as it is an archive of the code as it was at the time of publication in the associated F1000Research article. For the latest version of this code, please see http://www.cbs.dtu.dk/~oksana/PhD_Thesis/PanFunPro/.

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Keywords

Pan-genome analysis

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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