Downloads provided by UsageCountsDatasets and supplemental information accompanying scANANSE
Arts, J.A.; Smits, J.G.A.; Frölich, S.; Snabel, R.R.; Heuts, B.M.A.; Martens, J.H.A.; Van Heeringen, S.J.; +1 Authors
Arts, J.A.; Smits, J.G.A.; Frölich, S.; Snabel, R.R.; Heuts, B.M.A.; Martens, J.H.A.; Van Heeringen, S.J.; Zhou, J.H.;
Datasets and supplemental information accompanying scANANSE
This repository contains supplementary files from the paper: "scANANSE: gene regulatory network and motif analysis of single-cell clusters" as well as several accompanying datasets. The supplementary files: - Install_Rstudio.pdf - AnanseScanpy_equivalent.pdf The pre-processed Seurat object and the two pre-processed Scanpy objects can be used to run the scANANSE pipeline with: - preprocessed_PBMC.Rds - rna_PBMC.h5ad - atac_PBMC.h5ad Additional raw data, used to construct the pre-processed objects, supplemented from: https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_filtered_feature_bc_matrix.h5, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz.tbi, https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seura
- Radboud University Nijmegen Netherlands
single-cell RNA-seq, Transcription Factor, GRN analysis, single-cell ATAC-seq, Gene regulatory network, single-cell
single-cell RNA-seq, Transcription Factor, GRN analysis, single-cell ATAC-seq, Gene regulatory network, single-cell
selected citations These citations are derived from selected sources.This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).1 popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.Average influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).Average impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.Average views 45 downloads 100 - 45views100downloads
selected citations
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These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
Citations provided by BIP!popularityPopularity provided by BIP!
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
Popularity provided by BIP!influenceInfluence provided by BIP!
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
Influence provided by BIP!impulseImpulse provided by BIP!
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
Impulse provided by BIP!viewsViews provided by UsageCounts
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Average
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