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This data set accompanies the manuscript "Automated assembly of molecular mechanisms at scale from text mining and curated databases" which describes assembly methodology implemented in the INDRA system (https://github.com/sorgerlab/indra). The manuscript uses an example assembly pipeline on ~570k publications as input to create the INDRA Benchmark Corpus. This dataset provides INDRA Statements constituting the INDRA Benchmark Corpus as well as a set of curations on the corpus: - indra_benchmark_corpus.pkl: A Python pickle file of INDRA Statement objects. It requires INDRA to be installed to load in a Python environment. - indra_benchmark_corpus.json.gz: A gzipped JSON export of INDRA Statements. - indra_benchmark_corpus_curations.pkl: Aggregated curations on the Benchmark Corpus as a Python pickle file. The content is a list, where each element of the list is a dictionary providing a stmt_hash corresponding to the hash of a Statement in the Benchmark Corpus, and giving a correct flag (0 for overall incorrect, 1 for overall correct) to represent the overall result of curation, along with some other metadata. - indra_benchmark_corpus_curations.json: Aggregated curations on the Benchmark Corpus as a JSON file.
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 0 | |
| popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Average | |
| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |
| views | 43 | |
| downloads | 20 |

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