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ZENODO
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ZENODO
Dataset . 2022
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2022
License: CC BY
Data sources: ZENODO
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Investigation of machine learning algorithms for taxonomic classification of marine metagenomes

Authors: Park, Helen; Lim, Shen Jean; Cosme, Jonathan; O'Connell, Kyle; Sandeep, Jilla; Gayanilo, Felimon; Cutter, George R.; +4 Authors

Investigation of machine learning algorithms for taxonomic classification of marine metagenomes

Abstract

Training, testing, and blind datasets used for machine learning algorithms for taxonomic classification of marine metagenomes: K12.kmers.txt - 12bp k-mer vocabulary constructed by Jellyfish v1.1.11 from 47,894 genomes in GTDB release 202 MarRef_1.6.tsv - Metadata file downloaded from MarRef v1.6 MarRef.genustrain.fasta - Training set from MarRef v1.6 (seed=808) used for genus classification MarRef.genustest.fasta - Testing set from MarRef v1.6 (seed=747) used for genus classification MarRef.speciestrain.fasta - Training set from MarRef v1.6 (seed=808) used for species classification MarRef.speciestest.fasta - Testing set from MarRef v1.6 (seed=747) used for species classification MarRef.traintest.key.tsv - Table containing MarRef accession, GenBank accession, GenBank taxonomy ID, taxonomic information, and labels used for species and genus testing and training anonymous_reads_*.fq - Blind datasets (1-10) in interleaved fastq format reads_mapping_*.tsv - Key for blind datasets 1-10. Each sequence header is mapped to its corresponding MarRef accession and NCBI taxonomic ID.

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citations
The total number of citations received by all articles of the researcher of interest.
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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4
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