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Software . 2022
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ZENODO
Software . 2022
Data sources: Datacite
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SparseGMM

Authors: Bakr, Shaimaa;
Abstract

SparseGMM is a Bayesian generative model for learning the regulatory relationships among genes. In the context of gene regulatory networks, we classify genes into one of two types: target genes and regulator genes. Regulator genes are genes undergoing genomic events that are relevant to cancer progression or tumor growth. Target genes are genes whose expression is controlled by regulator genes, and which contribute to the biological processes responsible for cancer progression. Each group of target genes is regulated by a small set of regulator genes. To model this system, our Bayesian approach combines Gaussian mixtures with 1-norm regularization. We develop an expectation-maximization (EM)-based algorithm to obtain a maximum aposteriori (MAP) estimate the Gaussian mixture of parameters.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
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4
Related to Research communities
Cancer Research