The included files and script are to allow for reconstruction of the project structure and code used in "Yield Prediction Through Integration of Genetic, Environment, and Management Data Through Deep Learning" ( https://doi.org/10.1101/2022.07.29.502051 ). Data is included separately at 10.5281/zenodo.6916775. Filename Description .git.tar.gz Zipped git history .gitignore data.tar.gz Placeholder. Data from 10.5281/zenodo.6916775 should be unzipped into this folder models.tar.gz Models training and hyperparameter optimization notebooks.tar.gz Notebooks (Jupyter and Rmd) for data cleaning and analysis output.tar.gz Placeholder. Figures and tables are written into this folder README.md High level project organization SetupInstructions.sh Helper script to unzip folders This work was supported through funding from the USDA Agricultural Research Service, ARS project number 5070-21000-041-000-D.