Trained models that can be used for the software microbeSEG. The models were trained on a dataset consisting of 826 320x320 px crops extracted from the Omnipose dataset (bact_fluor train, bact_phase train), the microbeSEG dataset, and the Cell Tracking Challenge datasets BF-C2DL-HSC, BF-C2DL-MuSC, Fluo-N2DL-HeLa, and PhC-C2DL-PSC. The training dataset is also provided. Mean AJI+ scores on a test dataset with 32 320x320 px crops: - boundary_model_adam: 0.769 - boundary_model_ranger: 0.783 - distance_model_adam: 0.802 - distance_model_ranger: 0.835 When using these models, please cite (and check if pre-prints have meanwhile been published in a journal/conference): - microbeSEG, - our method, - Omnipose, - the latest Cell Tracking Challenge publication: current paper. Omnipose data license: www.cellpose.org/dataset_omnipose Usage Just download all files into the directory published in the microbeSEG repository. The models can then be selected in the graphical user interface of microbeSEG.