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Low-resolution description of the conformational space for intrinsically disordered proteins

Authors: Förster, Daniel; Idier, Jérôme; Liberti, Leo; Mucherino, Antonio; Lin, Jung-Hsin; Malliavin, Thérèse;
APC: 1,945 EUR

Low-resolution description of the conformational space for intrinsically disordered proteins

Abstract

AbstractIntrinsically disordered proteins (IDP) are at the center of numerous biological processes, and attract consequently extreme interest in structural biology. Numerous approaches have been developed for generating sets of IDP conformations verifying a given set of experimental measurements. We propose here to perform a systematic enumeration of protein conformations, carried out using the TAiBP approach based on distance geometry. This enumeration was performed on two proteins, Sic1 and pSic1, corresponding to unphosphorylated and phosphorylated states of an IDP. The relative populations of the obtained conformations were then obtained by fitting SAXS curves as well as Ramachandran probability maps, the original finite mixture approach RamaMix being developed for this second task. The similarity between profiles of local gyration radii provides to a certain extent a converged view of the Sic1 and pSic1 conformational space. Profiles and populations are thus proposed for describing IDP conformations. Different variations of the resulting gyration radius between phosphorylated and unphosphorylated states are observed, depending on the set of enumerated conformations as well as on the methods used for obtaining the populations.

Country
France
Keywords

570, Molecular Biology/Structural Biology [q-bio.BM], [SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], Protein Conformation, Science, [INFO.INFO-DS]Computer Science [cs]/Data Structures and Algorithms [cs.DS], Q, R, [INFO.INFO-DS] Computer Science [cs]/Data Structures and Algorithms [cs.DS], bioinformatics, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Article, Intrinsically Disordered Proteins, X-Ray Diffraction, Scattering, Small Angle, Medicine, structural biology, intrinsically disordered proteins

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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