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Software . 2022
License: https://opensource.org/licenses/MIT
Data sources: Datacite
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ZENODO
Software . 2022
License: https://opensource.org/licenses/MIT
Data sources: Datacite
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ZENODO
Software . 2022
License: http://opensource.org/licenses/MIT
Data sources: ZENODO
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Claim

strobealign: flexible seed size enables ultra-fast and accurate read alignment

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 07 Oct 2022Publisher:Zenodo
Authors: Kristoffer Sahlin;

doi: 10.5281/zenodo.7157827 , 10.5281/zenodo.7157828

strobealign: flexible seed size enables ultra-fast and accurate read alignment

Abstract

Strobealign is a fast short-read aligner. It achieves the speedup by using a dynamic seed size obtained from syncmer-thinned strobemers. Strobealign is multithreaded, implements alignment (SAM) and mapping (PAF). Preprint: https://doi.org/10.1101/2021.06.18.449070, GitHub: https://github.com/ksahlin/StrobeAlign

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Keywords

reads, strobemers, sequence analysis, Illumina, read alignment, syncmers

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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