This repository holds the data to benchmark the new metagenomic bin-refinement tool MAGScoT (in review; preprint: https://www.biorxiv.org/content/10.1101/2022.05.17.492251v1; github: https://github.com/ikmb/MAGScoT) in comparison to the gold standard tools DASTool and metaWRAP, as well as to the individual binning tools METABAT2, MAXBIN2, CONCOCT, and VAMB. These are two datasets: marine: CAMI2 marine dataset hmpgut: 50 gut metagenome samples from the HMP2 project The files included for each sample are: *.fasta: the filtered (>2kbp) assembled metagenomes *.prodigal.faa: the prodigal gene calls as amino acid sequences *.hmm: HMM annotations for 120 bacterial and 56 archaeal marker genes *.final_ctb.tsv: all binning output (contig-to-bin assignments) of the individual binning and bin-refinement tools