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Allosteric rescue of catalytically impaired ATP phosphoribosyltransferase variants links protein dynamics to active-site electrostatic preorganisation

Authors: Gemma Fisher; Marina Corbella; Magnus S. Alphey; John Nicholson; Benjamin J. Read; Shina C. L. Kamerlin; Rafael G. da Silva;

Allosteric rescue of catalytically impaired ATP phosphoribosyltransferase variants links protein dynamics to active-site electrostatic preorganisation

Abstract

Abstract ATP phosphoribosyltransferase catalyses the first step of histidine biosynthesis and is controlled via a complex allosteric mechanism where the regulatory protein HisZ enhances catalysis by the catalytic protein HisG S while mediating allosteric inhibition by histidine. Activation by HisZ was proposed to position HisG S Arg56 to stabilise departure of the pyrophosphate leaving group. Here we report active-site mutants of HisG S with impaired reaction chemistry which can be allosterically restored by HisZ despite the HisZ:HisG S interface lying ~20 Å away from the active site. MD simulations indicate HisZ binding constrains the dynamics of HisG S to favour a preorganised active site where both Arg56 and Arg32 are poised to stabilise leaving-group departure in WT-HisG S . In the Arg56Ala-HisG S mutant, HisZ modulates Arg32 dynamics so that it can partially compensate for the absence of Arg56. These results illustrate how remote protein-protein interactions translate into catalytic resilience by restoring damaged electrostatic preorganisation at the active site.

Countries
United Kingdom, Sweden
Keywords

MCC, 570, Molekylärbiologi, allostery, molecular dynamics parameters, QH301 Biology, Science, Q, Biochemistry and Molecular Biology, DAS, QH426 Genetics, ATP Phosphoribosyltransferase, molecular dynamics inputs, Biochemistry, Article, QH301, Allosteric Regulation, Catalytic Domain, ATP phosphoribosyltransferases, Histidine, QH426, Biokemi, Molecular Biology, Biokemi och molekylärbiologi

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
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6
3
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