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ZENODO
Dataset . 2022
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2022
License: CC BY
Data sources: ZENODO
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ZENODO
Dataset . 2022
License: CC BY
Data sources: Datacite
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Input features of E. coli proteome for predicting and modeling protein-protein interactions with AF2Complex

Authors: Gao, Mu; Nakajima An, Davi;

Input features of E. coli proteome for predicting and modeling protein-protein interactions with AF2Complex

Abstract

Input features to be used with AF2Complex for predicting protein-protein interactions among ~4400 E. coli proteins. A pickled feature file was generated by the feature data pipeline of AF2Complex for each E. coli protein. To reduce storage size, we limited up to 10,000 MSA sequences and up to 10 structural templates from the Protein Data Bank. The cutoff date for sequence libraries and the Protein Data Bank releases used for feature generation is no later than 11-30-2021. ecoli_af2c_fea.txt -- A list of all E coli protein with pre-generated input features af2c_fea_ecoli_220331_msa10ktem10.tar -- Input features named after the UniProt ID of each proteins. Note that after untar the tarball, you may use the gzipped feature pickle files directly with AF2Complex w/o gunzip.

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Keywords

protein-protein interaction, deep learning, alphafold, af2complex, virutal screening

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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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