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Computer program to analyze prevalence of SARS-CoV-2 Spike mutations at sites of N-linked glycosylation

Authors: Neelamegham, Sriram;

Computer program to analyze prevalence of SARS-CoV-2 Spike mutations at sites of N-linked glycosylation

Abstract

Abstract: Functional and epidemiological data suggest that N-linked glycans on the SARS-CoV-2 Spike protein may contribute to viral infectivity. To analyze this, we downloaded SARS-CoV-2 Spike protein sequences from GISAID (all available data up to 06/28/2022; EPI_SET_220803fo). The number of mutations in this protein at sites of N-linked glycosylation were enumerated using a program scripted using MATLAB. The program is provided as part of this repository. Data analyzed are available from GISAID.org. Methods: Data were collected by independent laboratories and other GISAID contributors. These were available from GISAID.org. A script was written to process these data in order to quantify mutation rates on Spike glycoprotein, with focus on mutations that occur at sites of N-liked glycosylation. Usage Notes: Data files are in .txt/.fasta format and can be opened using any plain text-reading software. The script is written using MATLAB, a common program commonly available in research universities.

Keywords

Medical and health sciences, Glycosylation, SARS-CoV-2, Spike glycoprotein, mutation, FOS: Medical and health sciences

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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