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cwieder/py-ssPA: v0.2.1

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 03 Aug 2022Publisher:Zenodo
Authors: cwieder;

doi: 10.5281/zenodo.7515344 , 10.5281/zenodo.6959120

cwieder/py-ssPA: v0.2.1

Abstract

Removal of rpy2 dependency for improved compatibility across systems Use GSEApy as backend for GSEA and ssGSEA Minor syntax changes ora.ttest_res is now ora.DA_test_res (as we can implement t-test or MWU tests) sspa_fgsea() is now sspa_gsea() and uses gseapy as the backend rather than R fgsea sspa_gsva() is temporarily deprecated due to the need for the rpy2 compatability - use the GSVA R package<!-- - Allow download of gene/protein pathways from KEGG and Reactome -->

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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