Gene annotation files for Fraxinus excelsior genome assembly v. BATG-0.5, published in Nature (doi:10.1038/nature20786). These files were previously hosted on the Ash Tree Genomes website (http://www.ashgenome.org/transcriptomes) and first made available for download via that site on 2016-02-08. The following annotation files are available: ### GFF file of all gene models (all isoforms) Fraxinus_excelsior_38873_TGAC_v2.gff3 ### FASTA file of all cDNA sequences (all isoforms) Fraxinus_excelsior_38873_TGAC_v2.gff3.cdna.fa ### FASTA file of all CDS DNA sequences (all isoforms) Fraxinus_excelsior_38873_TGAC_v2.gff3.cds.fa ### FASTA file of all peptide sequences (all isoforms) Fraxinus_excelsior_38873_TGAC_v2.gff3.pep.fa ### Functional annotation for each gene model (all isoforms) Fraxinus_excelsior_38873_TGAC_v2.gff3.functional_annotation.tsv ### GFF file of all gene models (longest isoform only) Fraxinus_excelsior_38873_TGAC_v2.longestCDStranscript.gff3 ### FASTA file of all cDNA sequences (longest isoform only) Fraxinus_excelsior_38873_TGAC_v2.longestCDStranscript.gff3.cdna.fa ### FASTA file of all CDS DNA sequences (longest isoform only) Fraxinus_excelsior_38873_TGAC_v2.longestCDStranscript.gff3.cds.fa ### FASTA file of all peptide sequences (longest isoform only) Fraxinus_excelsior_38873_TGAC_v2.longestCDStranscript.gff3.pep.fa ### GFF file for gene models identified as probable transposable element related sequences (excluded from the other files) Fraxinus_excelsior_38873_TGAC_v2.transposable_elements.gff3 NB: The annotation files include preliminary annotations for genes within the organellar scaffolds (gene models FRAEX38873_v2_000400370-FRAEX38873_v2_000401330), which were not reported in the publication of the BATG0.5 assembly (doi:10.1038/nature20786).

{"references": ["doi:10.1038/nature20786"]}