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CHROMATIN ACTIVATION PROFILING OF STEREOTYPED CHRONIC LYMPHOCYTIC LEUKEMIAS

Authors: Tsagiopoulou, Maria;

CHROMATIN ACTIVATION PROFILING OF STEREOTYPED CHRONIC LYMPHOCYTIC LEUKEMIAS

Abstract

We used chromatin-immunoprecipitation followed by sequencing (ChIP-Seq) with an antibody for the H3K27ac (a bona fide histone mark for regulatory element activation) in sorted CLL cells from 46 CLL, including 21 cases from stereotyped subsets #1, #2, #4, and #8, and 15 normal B cell subpopulations. To understand their functional impact, we integrated our data with 16 RNA-seq data. Files description: - H3K27ac_freq2_FDR_consensus_2022.txt count matrix from H3K27ac signals - H3K27ac_FDR_consensus_norm.Combat_2022.txt count matrix from H3K27ac signals after batch effect correction - metadata.csv metadata information - metadata_batchEffectCorrection.csv metadata information regarding the batch effect correction - RNAseq_norm.Combat_results.txt count matrix from RNAseq after batch effect correction - signature_RESAMPLING_ss8VSucll_2022.txt differentially acetylated regions between U-CLL and stereotyped subset #8 applying random sampling 100 times with a range of samples from 5 to n-1 in each category. The regions showing frequency >=20% were considered significant regions.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
0
Average
Average
Average
1
10
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