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Dataset . 2022

Data sources: Datacite

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Dataset . 2022

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PMDB: a relational database for PubMed

Research datakeyboard_double_arrow_right Dataset 19 Jul 2022Publisher:Zenodo

Authors: Hughey, Jacob; Schoenbachler, Joshua;

doi: 10.5281/zenodo.6864161

PMDB: a relational database for PubMed

- Summary
- Related research
  (23)
- Metrics

Abstract

The files constitute a compressed dump of PMDB, which was created in PostgreSQL 14 using the pmparser R package. Once you have a Postgres server running, you can set up the database as follows: 1. Untar the file containing the database dump, which will create a folder. Substitute <tar_name> with the name of the tar file. tar xvf <tar_name> && rm <tar_name> 2. Restore the database onto your Postgres server. Below is one way. Replace <...> as appropriate, substituting <dump_name> with the name of the new folder containing the dump files. This will take some time, so use as many cores as you can spare. Beware the full database is about 136 GB. createdb -h <host_name> -U <user_name> pmdb pg_restore -j <num_cores> --no-privileges --no-owner -h <host_name> -U <user_name> -d pmdb <dump_name> MEDLINE/PubMed data are courtesy of the U.S. National Library of Medicine. See NLM's Terms and Conditions.

Related Organizations

Vanderbilt University Medical Center
United States

23 Research products, page of 3

Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average

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