This entry contains the data generated by the study "Functional genomics analysis to disentangle the role of genetic variants in major depression" that are part of the Supplementary information of the article describing the study. The entry contains the following data: Supplementary Tables S1-S7 Supplementary Table S1. Summary of resources. Supplementary Table S2. Causal GVs for MD. Supplementary Table S3. pGenes functional and disease enrichment analysis. Supplementary Table S4. Fine-mapped MD causal GVs disease enrichment analysis. Supplementary Table S5. Colocalizing GWAS-eQTLs association to disease. Supplementary Table S6. TFBS analysis. Supplementary Table S7. GVs state annotation.

Additional funding not supported by Open-Aire Instituto de Salud Carlos III-Fondo Social Europeo, FI18/00034 Instituto de Salud Carlos III, MV20 European Regional Development Fund (ERDF) and Generalitat de Catalunya, Project 001-P-001647 - Valorisation of EGA for Industry and Society Agència de Gestió d'Ajuts Universitaris i de Recerca Generalitat de Catalunya, 2017SGR00519 Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica–Universidad Nacional Autónoma de México (PAPIIT-UNAM), IA203021 CONACYT-FORDECYT-PRONACES, 11311 Instituto de Salud Carlos III, PT13/0001/0023