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AdelmanLab/Enhancer-Annotation: CoGENT

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 16 Jun 2022Publisher:Zenodo
Authors: arfield1;
Code repository: https://github.com/AdelmanLab/Enhancer-Annotation/tree/EnhancerAnnotation

doi: 10.5281/zenodo.6654471 , 10.5281/zenodo.6654472

AdelmanLab/Enhancer-Annotation: CoGENT

Abstract

Connecting Genes to Enhancers with Nascent Transcriptomics Scripts developed by Andrew Field for the purpose of filtering and annotating enhancers peaks generated with dREG. dREG peaks are filtered by read count, p-value, and peak score with dRIP_filt.R. CoGENT.R filters peaks are annotated by proximity to genes (promoter proximal, intragenic, or intergenic). Distal peaks (intragenic and intergenic) are then tied to likely target genes. The dominant transcription start site within each enhancer peak is determined by TSScent.R.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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