RDS files of SingleCellExperiment objects containing raw single cell RNA-seq count data required to replicate the analyses presented at: https://oshlacklab.com/paed-cf-cite-seq/ and described in the pre-print titled: "Multimodal single cell analysis of the paediatric lower airway reveals novel immune cell phenotypes in early life health and disease". Instructions for how to incorporate the raw data into the analysis can be found at: https://oshlacklab.com/paed-cf-cite-seq/gettingStarted.html and the complete analysis code and additional data files can be cloned/downloaded from: https://github.com/Oshlack/paed-cf-cite-seq.