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Monod supporting data

Name: Monod supporting data
Keywords: chemical master equation, scRNA-seq, sequencing

Research datakeyboard_double_arrow_right Dataset 01 Jan 2022Embargo end date: 12 Jun 2022Publisher:Zenodo

Authors: Gorin, Gennady; Pachter, Lior;

doi: 10.5281/zenodo.6596872 , 10.5281/zenodo.6612727 , 10.5281/zenodo.6635262

Monod supporting data

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Abstract

The release of the Monod package (https://github.com/pachterlab/monod) is accompanied by the analysis of several 10X datasets to identify trends in transcriptional regulation mechanisms and parameters. This data deposit contains the copy-number data as well as the results of the Monod inference pipeline. allen_celltypes.tar.gz: raw loom files generated by splitting four Allen brain datasets according to GABAergic and glutamatergic cell type-specific barcodes. gg_220526_021_modelcomp_1.tar.gz: search results and figures from fitting four models to five 10X datasets. gg_220527_021_allen_celltypes_1.tar.gz: search results and figures from fitting four models to the eight Allen brain datasets.

Related Organizations

California Institute of Technology
United States

Keywords

chemical master equation, scRNA-seq, sequencing

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3 Research products, page 1 of 1

10X biology and sequencing model fit results
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Monod supporting data
2025IsVersionOf
10X spliced and unspliced gene count matrices
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Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	1
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average