TF binding models built by JAMS (https://github.com/csglab/JAMS), ChIP-seq peak files (from ENCODE, Najafabadi et al. 2015, Schmitges et al. 2016, and Imbeault et al. 2017; called by MACS 1.4v), ChIP-seq pulldown and control tags from said peaks, input data for JAMS, and RCADE2 motifs for C2H2 zinc finger proteins.

{"references": ["Hernandez-Corchado, A., Najafabadi, H.S. Toward a base-resolution panorama of the in vivo impact of cytosine methylation on transcription factor binding. Genome Biol 23, 151 (2022). https://doi.org/10.1186/s13059-022-02713-y"]}