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Dataset . 2022
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Dataset . 2022
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ZENODO
Dataset . 2022
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ZENODO
Dataset . 2022
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ZENODO
Dataset . 2022
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Data sources: ZENODO
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Claim

Sample graphs and sequences for testing sequence-to-graph alignment

Research datakeyboard_double_arrow_right Dataset 05 Feb 2022Publisher:Zenodo
Authors: Li, Heng;

doi: 10.5281/zenodo.5976062 , 10.5281/zenodo.5976063 , 10.5281/zenodo.6617246 , 10.5281/zenodo.6056061

Sample graphs and sequences for testing sequence-to-graph alignment

Abstract

File descriptions: MHC-61.agc: 61 complete MHC sequences, including GRCh38, CHM13 and 59 haplotypes extracted from HPRC year-1 assemblies. Use AGC to extract individual haplotype sequences. MHC-57.gfa.gz: sequence graph constructed by minigraph-0.18, excluding sample HG002 and HG005 C4-96.agc: 96 complete C4 sequences obtained from HPRC C4-90.gfa.gz: sequence graph extracted from the full HPRC year-1 minigraph graph (v0.17) around the C4A/C4B genes. The graph takes GRCh38 as the reference and excludes sample HG002, HG005 and NA19240.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
3
Top 10%
Average
Average
88
56