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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2021
License: CC BY
Data sources: ZENODO
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1000 Genomes Project Cleaned Dataset

Authors: Paterson, Andrew D.; Roslin, Nicole M.; Strug, Lisa J.; Weili, Li; Eric Emmenegger; Anton Sugolov;

1000 Genomes Project Cleaned Dataset

Abstract

The first four authors performed standard quality control analysis on the 1000 Genomes (1KG) Project genotypes that were generated on the Illumina Omni2.5M chip, at the Broad and Sanger Institutes. The datasets were then posted on the website of The Centre for Applied Genomics at Sick Kids Hospital at https://www.tcag.ca/tools/1000genomes.html. The last two authors then looked for overlap between those datasets and the Hapmap3 datasets that had gene expression for Endoplasmic Reticulum Aminopeptidase 2 (ERAP2), and chose the Yoruban from Ibadan, Nigeria (YRI) and Utah residents with Northern and Western European ancestry (CEU) subpopulations. These two subpopulations had the largest overlap between the 1KG and HapMap3 datasets, with 91 YRI and 104 CEU samples. The text files provided in this repository contain the IDs of all invidividuals and phenotypes for the labelled populations e.g. ERAP2_CEU_YRI_phenotypes.txt has phenotypes for both populations. The two *_pc_outliers.txt contain the IDs of the individuals excluded from analysis due to extraneous principal components. In summary, 88 YRI and 102 CEU individuals were included in the analysis.

{"references": ["Nicole M. Roslin, Li Weili, Andrew D. Paterson, Lisa J. Strug bioRxiv 078600; doi: https://doi.org/10.1101/078600", "The 1000 Genomes Project Consortium. A global reference for human genetic variation. Nature 526, 68\u201374 (2015). https://doi.org/10.1038/nature15393"]}

Keywords

1000 Genomes

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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