Appendix attachments for MSc thesis report

Image Acquisition protocol ‘compressedFISH ROBOFISH job.ipynb’ Image Processing - Cell segmentation and compressed sensing pipeline ‘’imagedata.py” “ImageAnalysis_testing.ipynb” extra files for imagedata.py to work: stitcher.py Output files: polygons.pkl map_from_centroid_to_average.pkl average_intensities.pkl Other attachments in Zenodo: Exp name ‘16-gene’ pilot exp ‘167-gene’ exp at 40X and 60X ‘167-gene’ exp at 20X Amplifiers used CompositeAmplifiers.xlsx Genes targeted codebook_composite_test_High.xlsx 167genes_MouseBrain.xlsx MouseGeneSelection.txt Exp logs ROBOFISH log FLEXP2022-02-08 amplifier test.txt ROBOFISH log FLEXP2022-02-17.txt ROBOFISH log FLEXP2022-04-22.txt ROBOFISH log FLEXP2022-04-15.txt Table 2. List of each experiment’s respective attachments, as stored in Zenodo.

Related Organizations

Karolinska Institute
Sweden

Keywords

compressed_sensing, compressedFISH, composite, smFISH

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