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PatchGastricADC22

Authors: Tsuneki, Masayuki; Fahdi Kanavati;

PatchGastricADC22

Abstract

Computational histopathology has made significant strides in the past few years, slowly getting closer to clinical adoption. One area of benefit would be the automatic generation of diagnostic reports from H\&E-stained whole slide images which would further increase the efficiency of the pathologists' routine diagnostic workflows. In this study, we compiled a dataset (PatchGastricADC22) of histopathological captions of stomach adenocarcinoma endoscopic biopsy specimens, which we extracted from diagnostic reports and paired with patches extracted from the associated whole slide images. The dataset contains a variety of gastric adenocarcinoma subtypes. We trained a baseline attention-based model to predict the captions from features extracted from the patches and obtained promising results. We make the captioned dataset of 262K patches publicly available.

Keywords

Histopathology, Gastric Adenocarcinoma

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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394