Single-cell datasets for distribution-based sketching

Contains preprocessed single-cell data for sketching single-cell samples. Preprocessed adata objects can be accessed using the 'read_h5ad' function in Scanpy. The HIV Vaccine Trials Network (HVTN) Flow Cytometry dataset (hvtn_preprocessed.h5ad) was originally downloaded from the Flow Repository under Repository ID FR-FCM-ZZZV (http://flowrepository.org/id/FR-FCM-ZZZV). The preeclampsia CyTOF dataset (preeclampsia_preprocessed.h5ad) was originally downloaded from the Flow Repository under Repository ID FR-FCM-ZYRQ (http://flowrepository.org/id/FR-FCM-ZYRQ). The NK-Cell CyTOF dataset (nk_cell_preprocessed.h5ad) from Ref. (https://www.nature.com/articles/ncomms14825) was originally downloaded from (https://github.com/eiriniar/CellCnn). The multiple sclerosis (MS) single-cell RNA sequencing dataset of peripheral blood samples (ms_preprocessed.h5ad) from Ref. (https://www.nature.com/articles/s41467-019-14118-w) was originally accessed from the Gene Expression Omnibus using the accession code GSE138266 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138266).

Keywords

Cytometry, Single-Cell Bioinformatics, Clinical Prediction

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