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Dataset . 2022
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Dataset . 2022
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Dataset . 2022
License: CC BY
Data sources: Datacite
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Dataset . 2022
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ZENODO
Dataset . 2022
License: CC BY
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AMR Benchmarking dataset - Metagenomics

Research datakeyboard_double_arrow_right Dataset 18 Jan 2022Publisher:Zenodo
Authors: Maguire, Finlay;

doi: 10.5281/zenodo.5867164 , 10.5281/zenodo.6543357 , 10.5281/zenodo.5867163

AMR Benchmarking dataset - Metagenomics

Abstract

Metagenomic benchmarking dataset for AMR detection pipelines for assemblies focusing on ESKAPE pathogens in addition to Salmonella. This dataset consists of closed genomes from NCBI where paired-end Illumina data was available. These genomes were then randomly assigned a relative abundance, had additional AMR genes randomly inserted (to cover all AMR genes in CARD v3.1.4) and metagenomic Illumina reads simulated from them. Metagenomic simulation was performed using: https://github.com/fmaguire/AMR_Metagenome_Simulator and the entire process can be repeated using the metagenome_benchmark.sh script included above.

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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