Comparison of Methods and Resources for Cell-cell Communication Inference from Single-cell RNA-Seq Data (Source and Output Data)

Authors: Dimitrov, Daniel; Türei, Dénes; Garrido-Rodriguez, Martin; Burmedi, Paul L.; Nagai, James S.; Boys, Charlotte; Flores, Ricardo O. Ramirez; +6 Authors

doi: 10.5281/zenodo.6531218 , 10.5281/zenodo.6525078 , 10.5281/zenodo.6525079

Comparison of Methods and Resources for Cell-cell Communication Inference from Single-cell RNA-Seq Data (Source and Output Data)

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Repository with all of the source data for both main text and supplemental figures, along with related output data, from the "Comparison of Methods and Resources for Cell-cell Communication Inference from Single-cell RNA-Seq Data" manuscript. resource_source_data.RDS - Figures 3 & 4, and Supp. Figures 1-11. aggregates/ - Aggregated liana output. Used throughout the comparisons and evaluations of the methods. comparison_out/ - Figure 5; Supp. Figures 12 & 16-24. robustness_plots.RDS - Supp. Figures 13 cytosig_out/ - Figure6A & Supp. Figure 14 spatial_out/ - Figure 6B & Supp. Figure 15 citeseq_out/ - Supp. Figure 26

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