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Comparison of Methods and Resources for Cell-cell Communication Inference from Single-cell RNA-Seq Data (Source and Output Data)

appsOther research productkeyboard_double_arrow_right Other ORP type 09 May 2022Publisher:ZenodoFunded by:EC | STRATEGY-CKD
Authors: Dimitrov, Daniel; Türei, Dénes; Garrido-Rodriguez, Martin; Burmedi, Paul L.; Nagai, James S.; Boys, Charlotte; Flores, Ricardo O. Ramirez; +6 Authors

doi: 10.5281/zenodo.6531218 , 10.5281/zenodo.6525078 , 10.5281/zenodo.6525079

Comparison of Methods and Resources for Cell-cell Communication Inference from Single-cell RNA-Seq Data (Source and Output Data)

Abstract

Repository with all of the source data for both main text and supplemental figures, along with related output data, from the "Comparison of Methods and Resources for Cell-cell Communication Inference from Single-cell RNA-Seq Data" manuscript. resource_source_data.RDS - Figures 3 & 4, and Supp. Figures 1-11. aggregates/ - Aggregated liana output. Used throughout the comparisons and evaluations of the methods. comparison_out/ - Figure 5; Supp. Figures 12 & 16-24. robustness_plots.RDS - Supp. Figures 13 cytosig_out/ - Figure6A & Supp. Figure 14 spatial_out/ - Figure 6B & Supp. Figure 15 citeseq_out/ - Supp. Figure 26

Accredited to all authors in the manuscript.

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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