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Bayesian MRI reconstruction with joint uncertainty estimation using diffusion models

Authors: Luo, Guanxiong; Blumenthal, Moritz; Heide, Martin; Uecker, Martin; Luo, Guanxiong;; Blumenthal, Moritz;; Heide, Martin;; +1 Authors

Bayesian MRI reconstruction with joint uncertainty estimation using diffusion models

Abstract

PurposeWe introduce a framework that enables efficient sampling from learned probability distributions for MRI reconstruction.MethodSamples are drawn from the posterior distribution given the measured k‐space using the Markov chain Monte Carlo (MCMC) method, different from conventional deep learning‐based MRI reconstruction techniques. In addition to the maximum a posteriori estimate for the image, which can be obtained by maximizing the log‐likelihood indirectly or directly, the minimum mean square error estimate and uncertainty maps can also be computed from those drawn samples. The data‐driven Markov chains are constructed with the score‐based generative model learned from a given image database and are independent of the forward operator that is used to model the k‐space measurement.ResultsWe numerically investigate the framework from these perspectives: (1) the interpretation of the uncertainty of the image reconstructed from undersampled k‐space; (2) the effect of the number of noise scales used to train the generative models; (3) using a burn‐in phase in MCMC sampling to reduce computation; (4) the comparison to conventional ‐wavelet regularized reconstruction; (5) the transferability of learned information; and (6) the comparison to fastMRI challenge.ConclusionA framework is described that connects the diffusion process and advanced generative models with Markov chains. We demonstrate its flexibility in terms of contrasts and sampling patterns using advanced generative priors and the benefits of also quantifying the uncertainty for every pixel.

Countries
Germany, Germany
Keywords

FOS: Computer and information sciences, Computer Science - Machine Learning, Uncertainty, Bayes Theorem, Magnetic Resonance Imaging, Monte Carlo Method, Algorithms, Machine Learning (cs.LG)

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
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