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ZENODO
Dataset . 2022
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2022
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2022
License: CC BY
Data sources: Datacite
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Protein-RNA complex simulation

Authors: Trowitzsch, Simon; Stelzl, Lukas;

Protein-RNA complex simulation

Abstract

Simulation trajectory of TSEN/pre-tRNAArgTCT generated with GROMACS. A hybrid model of truncated TSEN/pre-tRNAArgTCT with the additional TSEN2 domain from AlphaFold Jumper et al, 2021 and in silico modeled intron bases 37 to 43 was subjected to all-atom molecular dynamics simulations for assessment of flexibility. Simulation trajectory can be visualised with PyMOL or VMD. The protein was described by the AMBER14ff (Maier, et al 2015), and the RNA with the OL3 force field (Zgarbova et al, 2011) and the TIP3P water model was employed (Jorgensen et al, 1983).

Keywords

RNA, tRNA, molecular dynamics

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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