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BioExcel Webinar #63: Gromacs/pmx for large scale alchemical protein-ligand binding affinity screening

Authors: Gapsys, Vytas;

BioExcel Webinar #63: Gromacs/pmx for large scale alchemical protein-ligand binding affinity screening

Abstract

Alchemical free energy calculations have come of age. Based on rigorous first principles of statistical mechanics, these calculations explore physical paths not experimentally accessible and provide unprecedented accuracy in the prediction of processes as diverse as protein thermostability and ligand binding free energies. In the talk I will cover the latest developments in pmx focusing on the protein-ligand binding affinity calculations. I will present the results from the large scale relative and absolute binding free energy calculations. I will also discuss efficiency and performance-to-price ratio of such simulations when run in an HPC center and in the cloud infrastructure.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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