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Software . 2022
Data sources: Datacite
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Software . 2022
Data sources: ZENODO
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PhysiCOOL

Authors: Gonçalves, Inês G; Hormuth, David; Phillips, Caleb; Prabhakaran, Sandhya;
Abstract

PhysiCOOL is a Python library tailored to perform model calibration studies with PhysiCell. Using the PhysiCOOL package, PhysiCell projects can be converted into black-box models to characterize how simulation outputs change in response to variations in input values. PhysiCOOL takes advantage of Python's popularity and simplicity which makes PhysiCell models more accessible and enables users to integrate Python-based calibration tools with their PhysiCell workflows. Although PhysiCOOL was designed to create full model calibration workflows, its components can be used independently according to the users' needs. For instance, this novel package implements a file parser that enables users to read and write data to the PhysiCell XML configuration file using simple Python commands. Data validation is performed when new information is written to the files, assuring that the new values are consistent with PhysiCell's requirements and assumptions. Furthermore, PhysiCOOL also provides new functions to process and visualize simulation outputs which can be used for both parameter exploration and model calibration.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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